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fredag 13 april 2018

TRIM21 (Kr.11p15.4) RNF81,Sicca Syndrome Antigen 1, RoSSA, Ribonucleoprotein autoantigen SS_A

TRIM21 (Kr.11p15.4), RNF81, (C_IV, PRYSPRY), Sicca Syndrome_Antigen A , RoSSA, Ribonucleoprotein autoantigen SS_A, Sjögren Syndrome antigen A1, 52kDa Ro protein

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2329685/
TRIM 21 geenillä on konservatiiviset domeenit RING, BBox1, Bbox2 ja Coiled coil. C-terminaali on PRYS/SPRY, joten se on C-IV- alaluokkaa. Koodautunut proteiini on osana RoSSA ribonukleoproteiinia, joka käsittää yksittäisen polypeptidin ja neljä pientä RNA molekyyiä. RoSSA-partikkeli lokalisoituu sekä sytoplasmaan että tmaan. RoSSA tekee interaktioita autoantigeenien kanssa esim Sjögrenin syndromapotilailla ja SLE-potilalla. Vaihtoehtoisesti pleissautuneita variantteja on kuvattu, mutta täyspitkää vain yksi. Geeniä ilmenee eniten pernassa, umpilisäkkeessä, sitten keuhkoissa ja imusolmukkeissa ja 22 muussa kudoksessa. (Suomennos kesken)

  • SSA; RO52; SSA1; RNF81; Ro/SSA Summary This gene encodes a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The encoded protein is part of the RoSSA ribonucleoprotein, which includes a single polypeptide and one of four small RNA molecules. The RoSSA particle localizes to both the cytoplasm and the nucleus. RoSSA interacts with autoantigens in patients with Sjogren syndrome and systemic lupus erythematosus. Alternatively spliced transcript variants for this gene have been described but the full-length nature of only one has been determined. [provided by RefSeq, Jul 2008] Expression Ubiquitous expression in spleen (RPKM 15.5), appendix (RPKM 13.2) and 24 other tissues See more Orthologs mouse all
  • Names: Preferred Names
E3 ubiquitin-protein ligase TRIM21
Names
52 kDa Ro protein
52 kDa ribonucleoprotein autoantigen Ro/SS-A
RING finger protein 81
RING-type E3 ubiquitin transferase TRIM21
SS-A
Sicca syndrome antigen A
Sjogren syndrome antigen A1 (52kDa, ribonucleoprotein autoantigen SS-A/Ro)
ro(SS-A)
sjoegren syndrome type A antigen
tripartite motif-containing protein 21
NP_003132.2

  • Conservative domains
smart00336
Location:91 → 128
BBOX; B-Box-type zinc finger
cd12900
Location:287 → 465
SPRY_PRY_TRIM21; PRY/SPRY domain in tripartite motif-binding protein 21 (TRIM21) also known as 52kD Ribonucleoprotein Autoantigen (Ro52)
cd16596
Location:12 → 55
RING-HC_TRIM21_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein TRIM21 and similar proteins
cl25732
Location:67 → 238
SMC_N; RecF/RecN/SMC N terminal domain
Related articles in PubMed

  1. Ro60/SSA levels are increased and promote the progression of pancreatic ductal adenocarcinoma. Liu D, et al. Biochem Biophys Res Commun, 2018 Jan 22. PMID 29274781
  2. Alterations of TRIM21-mRNA expression during monocyte maturation. Lenart M, et al. Immunobiology, 2017 Mar. PMID 27773663
  3. Sequential ubiquitination and deubiquitination enzymes synchronize the dual sensor and effector functions of TRIM21. Fletcher AJ, et al. Proc Natl Acad Sci U S A, 2015 Aug 11. PMID 26150489, Free PMC Article
See all (146) citations in PubMed
See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  1. TRIM21-induced exposure of the viral genome promotes sensing of DNA and RNA viruses by cGAS and RIG-I

Japanese Encephalitis virus and TRIM21
https://link.springer.com/article/10.1186/1742-2094-11-24
Muistiin 13.4. 2018, Suomennos kesken.

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