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måndag 20 januari 2020

Lipidiperoksidaatio, FERROPTOOSI ja NRF2

 https://www.ncbi.nlm.nih.gov/pubmed/30042655  

2018

FERROPTOOSI on äskettäin kuvattu uusi säädetyn solukuoleman muoto, joka on eri kuin apoptoosi, nekroptoosi tai muut solukuoleman muodot.  Ferroptoosia indusoi  Glutationisynteesin keskeytyminen tai glutationiperoksidasi4:n estyminen ;   rauta lisää ferroptoosia ; ferroptoosia estää  vapaita radikaaleja pyystävät aineet  kuten ferrostatiini-1, liprostatiini-1 ja endogeeninen E-vitamiini.

Ferroptoosi  terminoituu mitokondriaalisen  dysfunktioon  ja toksiseen lipidiperoksidaatioon. Vaikka onkin haastavaa tunnistaa elävästä kehosta  ferroptoosia , monet neurodegeneraatioiden  hyvin  selvitetyt piirteet  ovat  myös johdonmukaisesti   esiintyviä ferroptoosissa, kuten  lipidiperoksidaatio, mitokondriaalinen  rikkoutuminen ja raudan vikasäätyminen. Niinpä neurodegeneraatiossa esiintyvän ferroptoosin osuus  on alkanut kiinnostaa enemmän ja spesifistä näyttöäkin  kertyy nopeaan. 

Eräs näkökohta, jota on  niukasti  huomioitu aiemmin  on NRF2,  antioksidanttien transkriptiofaktori, tumafaktori erytoidi-2:n kaltainen tekijä 2.  Tämä transkriptiofaktori säätelee satoja geenejä, joista usea on joko suoraan tai epåäsuoraan osallistumassa ferroptoosin modulointiin,   sisällyttäen tähän GSH:n, raudan ja lipidien aineenvaihdunnan sekä mitokondrianfunktio. 

Tämä  mahdollisesti asettaa NRF2:n determinoivaksi avainkomponentiksi  sen   moduloidessa ferroptoottisen stressin  alkua ja tuloksia.   Minimaalinen suora näyttö  jota nkyään on saatavilla,  on saatujen tietojen kanssa konsistenttia. Nrf2 saattaa olla kriittisen tärkeä  suojauduttaessa  ferroptoosilta.  Ja päinvastoin sellainen näyttö on erittäin runsasta, että Nrf2 - signaloinnin lisääntyminen on vahvasti neuroprotektiivista  neurodegeneraatiomalleissa, vaikka onkin epäselvää , mikä on se  eksakti mekanismi , jolla sellaisa tuloksia saadaan.  

Lisätutkimuksia tarvitaan   vahvistamaan, missä määrin Nrf2:n neuroprotektiivinen aktivaatio  osallistuu ferroptoosin estoon.

Abstract

Ferroptosis is a newly described form of regulated cell death, distinct from apoptosis, necroptosis and other forms of cell death. Ferroptosis is induced by disruption of glutathione synthesis or inhibition of glutathione peroxidase 4, exacerbated by iron, and prevented by radical scavengers such as ferrostatin-1, liproxstatin-1, and endogenous vitamin E. Ferroptosis terminates with mitochondrial dysfunction and toxic lipid peroxidation. Although conclusive identification of ferroptosis in vivo is challenging, several salient and very well established features of neurodegenerative diseases are consistent with ferroptosis, including lipid peroxidation, mitochondrial disruption and iron dysregulation. Accordingly, interest in the role of ferroptosis in neurodegeneration is escalating and specific evidence is rapidly emerging.
 One aspect that has thus far received little attention is the antioxidant transcription factor nuclear factor erythroid 2-related factor 2 (Nrf2). This transcription factor regulates hundreds of genes, of which many are either directly or indirectly involved in modulating ferroptosis, including metabolism of glutathione, iron and lipids, and mitochondrial function.
This potentially positions Nrf2 as a key deterministic component modulating the onset and outcomes of ferroptotic stress.
The minimal direct evidence currently available is consistent with this and indicates that Nrf2 may be critical for protection against ferroptosis. In contrast, abundant evidence demonstrates that enhancing Nrf2 signaling is potently neuroprotective in models of neurodegeneration, although the exact mechanism by which this is achieved is unclear.
Further studies are required to determine to extent to which the neuroprotective effects of Nrf2 activation involve the prevention of ferroptosis.

KEYWORDS:

Alzheimer’s disease; Huntington’s disease; Keap1; Parkinson’s disease; RSL3; erastin; motor neuron disease; system xc-
PMID:
30042655
PMCID:
PMC6048292
DOI:
10.3389/fnins.2018.00466
( KUVA, joka liittyy artikkeliin): 

Ferroptosis and its molecular regulation by Nrf2. 
Glutathione peroxidase 4 (Gpx4) utilizes the major cellular antioxidant glutathione (GSH) as a substrate to reduce lipid hydroperoxides (LOOH).
 Oxidized glutathione (GSSG) generated by Gpx4 is reduced back to glutathione (GSH) by glutathione reductase (GR) in a reaction requiring NADPH, 
which can be regenerated by glucose-6-phosphate dehydrogenase (G6PD) and phosphogluconate dehydrogenase (PGD) of the pentose-phosphate pathway, and malic enzyme (ME). 
The tripeptide glutathione (GSH) is synthesized by the consecutive action of glutamate-cysteine ligase (GCL) and glutathione synthetase (GSS), where the ligation of cysteine (Cys) and glutamate (Glu) by glutamate-cysteine ligase is the rate-limiting step of glutathione synthesis. 
The cellular import of cystine by the glutamate-cystine antiporter system xc- constitutes an significant route of cysteine supply for glutathione synthesis. 
Cysteine is also required for other important cellular antioxidants including thioredoxin (Trx) and thioredoxin reductase (TrxR). 
Ferroptosis occurs when the Gpx4-catalyzed reduction of lipid hydroperoxides is insufficient to prevent the iron-mediated generation of lipid radicals (LO)
This leads to the propagation of lipid peroxidation and culminates in ferroptosis. Ferroptosis can be experimentally induced by inhibiting Gpx4 via the small molecule inhibitor RSL3, or by limiting glutathione supply to Gpx4. The latter is induced by direct [e.g., buthionine sulfoximine (BSO)] or indirect (e.g., by limiting cysteine availability) inhibition of glutathione synthesis. Cysteine supply is disrupted by inhibitors of system xc- including erastin, sulfasalazine, and sorafenib.
 Ferroptosis can also be inhibited by iron chelators such as deferoxamine and deferiprone, and lipid radical scavengers such as ferrostatin-1, liproxstatin-1, and vitamin E. Factors transcriptionally regulated by Nrf2 are indicated in blue italics, whereas factors promoting ferroptosis are indicated in red. Clearly Nrf2 signaling is likely to have an integral and pervasive impact on the manifestation of ferroptosis. 
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2) 
NRF2 plays a critical role in mitigating lipid peroxidation and ferroptosis. Dodson M et al. Redox Biol. (2019)Abstract
The transcription factor nuclear factor erythroid 2-related factor 2 (NRF2) is a key regulator of the cellular antioxidant response, controlling the expression of genes that counteract oxidative and electrophilic stresses. Many pathological conditions are linked to imbalances in redox homeostasis, illustrating the important role of antioxidant defense systems in preventing the pathogenic effects associated with the accumulation of reactive species. In particular, it is becoming increasingly apparent that the accumulation of lipid peroxides has an important role in driving the pathogenesis of multiple disease states. A key example of this is the recent discovery of a novel form of cell death termed ferroptosis. Ferroptosis is an iron-dependent, lipid peroxidation-driven cell death cascade that has become a key target in the development of anti-cancer therapies, as well as the prevention of neurodegenerative and cardiovascular diseases.
 In this review, we will provide a brief overview of lipid peroxidation, as well as key components involved in the ferroptotic cascade. We will also highlight the role of the NRF2 signaling pathway in mediating lipid peroxidation and ferroptosis, focusing on established NRF2 target genes that mitigate these pathways, as well as the relevance of the NRF2-lipid peroxidation-ferroptosis axis in disease.

onsdag 1 januari 2020

KCTD6 (3p14.3), KCASH3 , (luonnollinen HDAC inhibiittori KCASH)

https://www.ncbi.nlm.nih.gov/gene/200845
  1. NM_001128214.2NP_001121686.1  BTB/POZ domain-containing protein KCTD6
    See identical proteins and their annotated locations for NP_001121686.1

    Conserved Domains (1) summary
    cd18394
    Location:10113
    BTB_POZ_KCTD6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 6 (KCTD6)


Related articles in PubMed
 

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

KCTD4(13q14.12-q14.13) , bA321C24.3

https://www.ncbi.nlm.nih.gov/gene/386618
Ilmentyy aivoissa ja ihossa.
Also known as
bA321C24.3
Expression
Biased expression in brain (RPKM 6.1), skin (RPKM 1.4) and 1 other tissue See more
Orthologs

KCTD10 (12q24.11), BTBD28,MSTP028, ULRO61 ,hBACURD3

https://www.ncbi.nlm.nih.gov/gene/83892

Also known as
BTBD28; ULRO61; MSTP028; hBACURD3
Summary
The protein encoded by this gene binds proliferating cell nuclear antigen (PCNA) and may be involved in DNA synthesis and cell proliferation. In addition, the encoded protein may be a tumor suppressor. Several protein-coding and non-protein coding transcript variants have been found for this gene. [provided by RefSeq, Dec 2015]
Expression
Ubiquitous expression in thyroid (RPKM 26.1), endometrium (RPKM 18.7) and 24 other tissues See more


Preferred Names
BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3
Names
BTB/POZ domain-containing protein KCTD10
potassium channel tetramerisation domain containing 10
potassium channel tetramerization domain-containing protein 10
https://www.ncbi.nlm.nih.gov/protein/NP_001304324.1 

ORIGIN      
        1 meemsgesvv ssavpaaatr ttsfkgtsps skyvklnvgg alyyttmqtl tkqdtmlkam
       61 fsgrmevltd segwilidrc gkhfgtilny lrdgavplpe srreieella eakyylvqgl
      121 veecqaalqq nkdtyepfck vpvitsskee qkliatsnkp avkllynrsn nkysytsnsd
      181 dnmlknielf dklslrfngr vlfikdvigd eiccwsfygq grkiaevcct sivyatekkq
      241 tkvefpeari yeetlnilly eaqdgrgpdn alleatggaa grshhldede ereriervrr
      301 ihikrpddra hlhq
What's a GeneRIF?

KCTD20 (6p21.31), C6orf69, dJ108k11.3. BTBD10:n kaltainen ja edistää haiman betasolukasvua.

https://www.ncbi.nlm.nih.gov/gene/222658
Official Symbol
KCTD20
Official Full Name
potassium channel tetramerization domain containing 20
Also known as
C6orf69; dJ108K11.3
Expression
Ubiquitous expression in fat (RPKM 16.9), gall bladder (RPKM 16.8) and 25 other tissues See more
    CDS             1..253
                     /gene="KCTD20"
                     /gene_synonym="C6orf69; dJ108K11.3"
                     /coded_by="NM_001286579.2:159..920"
                     /note="isoform b is encoded by transcript variant 2"
                     /db_xref="CCDS:CCDS69096.1"
                     /db_xref="GeneID:222658"
                     /db_xref="HGNC:HGNC:21052"
                     /db_xref="MIM:615932"
ORIGIN      
        1 mnvhrgsdsd rllrqeascl vddtlavaqe keanslassg phnltyplgp rnegallhel
       61 sndgahkqfd hyleelilpi mvgcakkger echivvltde dsvdwdedhp ppmgeeysqi
      121 lyssklyrff kyienrdvak tvlkerglkn irigiegypt ckekikrrpg grseviynyv
      181 qrpfiqmswe keegksrhvd fqcvrskslt nlvaagddvl edqeilmhhp pqvdeldrln
      241 aplsqmasnd fqd
//
 

 BTB/POZ domain-containing protein KCTD20 isoform c [Homo sapiens]
NCBI Reference Sequence:
NM_001286580.1
Click on image for an interactive view with Cn3D

Pleckstrin homology-like domain
The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.


KCTD21(11q14.1), KCASH2 ( KCTD sisältävä CUL3 adaptori, Hedgehog suppressori 2)

https://www.ncbi.nlm.nih.gov/gene/283219

Official Symbol
KCTD21
Official Full Name
potassium channel tetramerization domain containing 21
Also known as
KCASH2
Expression
Ubiquitous expression in thyroid (RPKM 3.5), brain (RPKM 3.4) and 25 other tissues See more
  1. NM_001029859.3NP_001025030.1  BTB/POZ domain-containing protein KCTD21


    Conserved Domains (1) summary
    cd18395
    Location:3100
    BTB_POZ_KCTD21; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 21 (KCTD21)
What's a GeneRIF?
 

KCTD19 (16q22.1)

https://www.ncbi.nlm.nih.gov/gene/146212
Preferred Names
BTB/POZ domain-containing protein KCTD19
Names
potassium channel tetramerisation domain containing 19
testicular tissue protein Li 101

  1. NM_001100915.3NP_001094385.1  BTB/POZ domain-containing protein KCTD19
    See identical proteins and their annotated locations for NP_001094385.1

    Conserved Domains (1) summary
    cl02518
    Location:1872
    BTB; BTB/POZ domain.The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerized PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.



   CDS             1..926
                     /gene="KCTD19"
                     /coded_by="NM_001100915.3:35..2815"
                     /db_xref="CCDS:CCDS42179.1"
                     /db_xref="GeneID:146212"
                     /db_xref="HGNC:HGNC:24753"
ORIGIN      
        1 meesgmahes aedlfhfnvg gwHfsvprsk lsqfpdsllw keasaltsse sqrlfidrdg
       61 stfrHvHyyl ytsklsfssc aelnllyeqa lglqlmpllq tldnlkegkh hlrvrpadlp
      121 vaeraslnyw rtwkciskps efpikspaft glhdkaplgl mdtplldtee evhycflpld
      181 lvakypslvt ednllwlaet valiececse frfivnflrs qkillpdnfs nidvleaeve
      241 ileipaltea vrwyrmnmgg cspttcspls pgkgartasl esvkplytma lgllvkypds
      301 algqlriest ldgsrlyitg ngvlfqhvkn wlgtcrlplt etisevyelc afldkrdity
      361 epikvalkth leprtlapmd vlnewtaeit vyspqqiikv yvgsHwyatt lqtllkypel
      421 lsnpqrvywi tygqtlliHg dgqmfrHiln flrlgklflp sefkewplfC qeveeyHips
      481 lsealaqCea ykswtqekes eneeafsirr lhvvtegpgs lvefsrdtke ttaympvdfe
      541 dcsdrtpwnk akgnlvrsnq mdeaeqytrp iqvslcrnak ragnpstysh crglctnpgh
      601 wgshpesppk kkcttinltq ksetkdppat pmqklislvr ewdmvnckqw efqpltatrs
      661 spleeatlql plgseaasqp stsaawkahs tasekdpgpq agagagakdk gpeptfkpyl
      721 ppkragtlkd wskqrtkere spapeqplpe asevdslgvi lkvthppvvg sdgfcmffed
      781 siiyttemdn lrhttptasp qpqevtflsf slsweemfya qkchcfladi imdsirqkdp
      841 kaitakvvsl anrlwtlhis pkqfvvdlla itgfkddrht qerlyswvel tlpfarkygr
      901 cmdlliqrgl srsvsysilg kylqed
//

KCTD18 (2q33.1) . Eräs Restless Legs syndrome (RLS) geenilocusalue . Ciliogenesis.interaktio.

https://www.ncbi.nlm.nih.gov/gene/130535

Official Symbol
KCTD18
Official Full Name
potassium channel tetramerization domain containing 18provided by HGNC
Also known as
6530404F10Rik
Expression
Ubiquitous expression in thyroid (RPKM 8.4), prostate (RPKM 6.2) and 25 other tissues See more

  1. NM_001321547.2NP_001308476.1  BTB/POZ domain-containing protein KCTD18 isoform 1

    Conserved Domains (2) summary
    smart00225
    Location:1298
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cl02518
    Location:1498
    BTB; BTB/POZ domain
Related articles in PubMed
What's a GeneRIF?
 

 https://www.ncbi.nlm.nih.gov/protein/NP_001308476.1

ORIGIN      
        1 meghkaeeev ldvlrlnvgg ciytarresl crfkdsmlas mfsgrfplkt desgacvidr
       61 dgrlfkylld ylhgevqipt deqtrialqe eadyfgipyp yslsdhlane metyslrsni
      121 elkkaltdfc dsyglvcnkp tvwvlhylnt sgascesrii gvyatktdgt daiekqlggr
      181 ihskgifkre agnnvqyiws yysvaelkkm mdafdawegk gvsywrvphe liecwtleer
      241 pllgslrhma pirkrrlitf neadesvnyk tgpkpvrflg pststqikvk nsasvtvspa
      301 saiqtsagat anrfqsgsrr kaaqrsapsr atalvgtgap ghpqaspgaa saenggthlp
      361 pakvllsdkk ptpqrviklk rtplcatapc lpsptatrqa nslkplpgea aralgvrten
      421 gknkgn
//