ZBED2 (3q13..3)

 https://www.genenames.org/data/genegroup/#!/group/64
ZBED2 (3q13.3) 
https://www.ncbi.nlm.nih.gov/gene/79413

Official Symbol

ZBED2

Official Full Name

zinc finger BED-type containing 2

Expression Biased expression in thyroid (RPKM 46.0), lung (RPKM 7.6) and 2 other tissues See more

 

Related articles in PubMed

1. ZBED evolution: repeated utilization of DNA transposons as regulators of diverse host functions. Hayward A, et al. PLoS One, 2013. PMID 23533661, Free PMC Article
2. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
3. A census of human transcription factors: function, expression and evolution. Vaquerizas JM, et al. Nat Rev Genet, 2009 Apr. PMID 19274049
4. Toward an understanding of the protein interaction network of the human liver. Wang J, et al. Mol Syst Biol, 2011 Oct 11. PMID 21988832, Free PMC Article
5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

See all (7) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

 https://www.ncbi.nlm.nih.gov/protein/NP_078784.2

Conserved Domains (1) summary

smart00614
Location:56 → 109

ZnF_BED; BED zinc finger

 

LOCUS       NP_078784                218 aa            linear   PRI 02-MAY-2019
DEFINITION  zinc finger BED domain-containing protein 2 [Homo sapiens].
ACCESSION   NP_078784
VERSION     NP_078784.2
DBSOURCE    REFSEQ: accession NM_024508.5
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (residues 1 to 218)
  AUTHORS   Hayward A, Ghazal A, Andersson G, Andersson L and Jern P.
  TITLE     ZBED evolution: repeated utilization of DNA transposons as
            regulators of diverse host functions
  JOURNAL   PLoS ONE 8 (3), e59940 (2013)
   PUBMED   23533661
REFERENCE   2  (residues 1 to 218)
  AUTHORS   Vaquerizas JM, Kummerfeld SK, Teichmann SA and Luscombe NM.
  TITLE     A census of human transcription factors: function, expression and
            evolution
  JOURNAL   Nat. Rev. Genet. 10 (4), 252-263 (2009)
   PUBMED   19274049
  REMARK    Review article
REFERENCE   3  (residues 1 to 218)
  AUTHORS   Oh JH, Yang JO, Hahn Y, Kim MR, Byun SS, Jeon YJ, Kim JM, Song KS,
            Noh SM, Kim S, Yoo HS, Kim YS and Kim NS.
  TITLE     Transcriptome analysis of human gastric cancer
  JOURNAL   Mamm. Genome 16 (12), 942-954 (2005)
   PUBMED   16341674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC055748.21, CV575511.1 and BC071956.1.
            On Dec 23, 2004 this sequence version replaced NP_078784.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1163658.175946.1, BE898283.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1966682
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000317012.5/ ENSP00000321370.4
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..218
                     /organism="Homo sapiens"
                     /db_xref="taxon:9606"
                     /chromosome="3"
                     /map="3q13.13"
     Protein         1..218
                     /product="zinc finger BED domain-containing protein 2"
                     /note="zinc finger, BED domain containing 2"
                     /calculated_mol_wt=24991
     Region          56..109
                     /region_name="ZnF_BED"
                     /note="BED zinc finger; smart00614"
                     /db_xref="CDD:214746"
     CDS             1..218
                     /gene="ZBED2"
                     /coded_by="NM_024508.5:913..1569"
                     /db_xref="CCDS:CCDS2960.2"
                     /db_xref="GeneID:79413"
                     /db_xref="HGNC:HGNC:20710"
                     /db_xref="MIM:615246"
ORIGIN      
        1 mmrredeeee gtmmkakgdl emkeeeeise tgelvgpfvs amptpmphnk gtrfseawey
       61 fHlaparagH HpnqyatCrl Cgrqvsrgpg vnvgttalwk HlksmHreel eksghgqagq
      121 rqdprphgpq lptgiegnwg rlleqvgtma lwasqrekev lrreravewr eravekrera
      181 leeveraile mkwkvraeke acqrekelpa avhpfhfv
//

 x6-H-x7-H-H-x6-C-xx-C-x19-H-x4-H-x3