Ubiquitin-like
proteins have been shown to be covalently conjugated to targets.
However, the functions of these ubiquitin-like proteins are largely
unknown. Here, we have screened most known ubiquitin-like proteins after
DNA damage and found that
NEDD8
is involved in the DNA damage response. Following various DNA damage
stimuli, NEDD8 accumulated at DNA damage sites; this accumulation was
dependent on an
E2 enzyme (UBE2M) and an E3
ubiquitin ligase (RNF111). We further found that
histone H4 was polyneddylated in response to DNA damage, and NEDD8 was conjugated to the
N-terminal lysine
residues of H4. Interestingly, the DNA damage-induced polyneddylation
chain could be recognized by the MIU (motif interacting with ubiquitin)
domain of RNF168. Loss of DNA damage-induced
neddylation negatively regulated DNA damage-induced foci formation of RNF168 and its downstream functional partners, such as
53BP1 and
BRCA1, thus affecting the normal DNA damage repair process.
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