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torsdag 5 juli 2018

USP7 (16p13.2), HAUSP, TEF1, herpesvirukseen assosioitu USP

USP7 (16p13.2) , HAUSP, TEF1, Herpesvirukseen assosioitunut USP
Also known as
TEF1; HAUSP
Summary
The protein encoded by this gene belongs to the peptidase C19 family, which includes ubiquitinyl hydrolases. This protein deubiquitinates target proteins such as p53 (a tumor suppressor protein) and WASH (essential for endosomal protein recycling), and regulates their activities by counteracting the opposing ubiquitin ligase activity of proteins such as HDM2 and TRIM27, involved in the respective process. Mutations in this gene have been implicated in a neurodevelopmental disorder. [provided by RefSeq, Mar 2016]
Expression
Ubiquitous expression in testis (RPKM 31.0), lymph node (RPKM 24.1) and 25 other tissues
Preferred Names
ubiquitin carboxyl-terminal hydrolase 7
Names
Herpes virus-associated ubiquitin-specific protease
deubiquitinating enzyme 7
ubiquitin specific peptidase 7 (herpes virus-associated)
ubiquitin specific protease 7 (herpes virus-associated)
ubiquitin thioesterase 7
ubiquitin-specific-processing protease 7
Conserved Domains (5) summary
COG5077
Location:39 → 1084
COG5077; Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
cd02659
Location:196 → 507
peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
cd03772
Location:51 → 186
MATH_HAUSP; Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence ...
pfam12436
Location:604 → 849
USP7_ICP0_bdg; ICP0-binding domain of Ubiquitin-specific protease 7
pfam14533
Location:859 → 1070
USP7_C2; Ubiquitin-specific protease C-terminal
Peptide structure, isoform 2
https://www.ncbi.nlm.nih.gov/protein/NP_001273386.1
ubiquitin carboxyl-terminal hydrolase 7 isoform 2 [Homo sapiens]
NCBI Reference Sequence: NP_001273386.1
Identical Proteins FASTA Graphics



LOCUS       NP_001273386            1086 aa            linear   PRI 17-JUN-2018
DEFINITION  ubiquitin carboxyl-terminal hydrolase 7 isoform 2 [Homo sapiens].
ACCESSION   NP_001273386 XP_005255622
VERSION     NP_001273386.1
DBSOURCE    REFSEQ: accession NM_001286457.1
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (residues 1 to 1086)
  AUTHORS   Xiang Q, Ju H, Li Q, Mei SC, Chen D, Choi YB and Nicholas J.
  TITLE     Human Herpesvirus 8 Interferon Regulatory Factors 1 and 3 Mediate
            Replication and Latency Activities via Interactions with USP7
            Deubiquitinase
  JOURNAL   J. Virol. 92 (7), e02003-17 (2018)
   PUBMED   29343584
  REMARK    GeneRIF: ubiquitin-specific protease 7 (USP7) deubiquitinase
            targeting by vIRF-3 (in addition to previously reported USP7
            binding by vIRF-1 and vIRF-4); the importance of vIRF-1 and vIRF-3
            interactions with USP7 for latent PEL cell growth and viability;
            and the positive and negative contributions, respectively, of USP7
            targeting by vIRF-1 and vIRF-3 to HHV-8 productive replication.
            Publication Status: Online-Only
REFERENCE   2  (residues 1 to 1086)
  AUTHORS   Wang F, Wang L, Wu J, Sokirniy I, Nguyen P, Bregnard T, Weinstock
            J, Mattern M, Bezsonova I, Hancock WW and Kumar S.
  TITLE     Active site-targeted covalent irreversible inhibitors of USP7
            impair the functions of Foxp3+ T-regulatory cells by promoting
            ubiquitination of Tip60
  JOURNAL   PLoS ONE 12 (12), e0189744 (2017)
   PUBMED   29236775
  REMARK    GeneRIF: demonstrate that both USP7 and various USP7 substrates are
            subjected to Lys48-mediated ubiquitin modification, consistent with
            increased proteasomal degradation of these proteins because of USP7
            inhibition
            Publication Status: Online-Only
REFERENCE   3  (residues 1 to 1086)
  AUTHORS   Novellasdemunt L, Foglizzo V, Cuadrado L, Antas P, Kucharska A,
            Encheva V, Snijders AP and Li VSW.
  TITLE     USP7 Is a Tumor-Specific WNT Activator for APC-Mutated Colorectal
            Cancer by Mediating beta-Catenin Deubiquitination
  JOURNAL   Cell Rep 21 (3), 612-627 (2017)
   PUBMED   29045831
  REMARK    GeneRIF: USP7 depletion in APC-mutated colorectal cancer inhibits
            Wnt activation by restoring beta-catenin ubiquitination, drives
            differentiation, and suppresses xenograft tumor growth.
REFERENCE   4  (residues 1 to 1086)
  AUTHORS   Tang Y, Lv L, Li W, Zhang X, Jiang Y, Ge W and Zhou Y.
  TITLE     Protein deubiquitinase USP7 is required for osteogenic
            differentiation of human adipose-derived stem cells
  JOURNAL   Stem Cell Res Ther 8 (1), 186 (2017)
   PUBMED   28807012
  REMARK    GeneRIF: protein deubiquitinase USP7 is an essential player in
            osteogenic differentiation of Human adipose-derived stem cells.
            Publication Status: Online-Only
REFERENCE   5  (residues 1 to 1086)
  AUTHORS   Jiang L, Xiong J, Zhan J, Yuan F, Tang M, Zhang C, Cao Z, Chen Y,
            Lu X, Li Y, Wang H, Wang L, Wang J, Zhu WG and Wang H.
  TITLE     Ubiquitin-specific peptidase 7 (USP7)-mediated deubiquitination of
            the histone deacetylase SIRT7 regulates gluconeogenesis
  JOURNAL   J. Biol. Chem. 292 (32), 13296-13311 (2017)
   PUBMED   28655758
  REMARK    GeneRIF: Data suggest that SIRT7 undergoes Lys-63
            polyubiquitination, later removed by USP7 to repress enzymatic
            activity of SIRT7; USP7 and SIRT7 regulate gluconeogenesis via
            expression of glucose-6-phosphatase catalytic subunit (G6PC); SIRT7
            targets G6PC promoter through ELK4. (SIRT7 = sirtuin 7; USP7 =
            ubiquitin specific peptidase 7; G6PC = glucose-6-phosphatase
            catalytic subunit; ELK4 = transcription factor ELK4)
REFERENCE   6  (residues 1 to 1086)
  AUTHORS   Hao YH, Fountain MD Jr, Fon Tacer K, Xia F, Bi W, Kang SH, Patel A,
            Rosenfeld JA, Le Caignec C, Isidor B, Krantz ID, Noon SE,
            Pfotenhauer JP, Morgan TM, Moran R, Pedersen RC, Saenz MS, Schaaf
            CP and Potts PR.
  TITLE     USP7 Acts as a Molecular Rheostat to Promote WASH-Dependent
            Endosomal Protein Recycling and Is Mutated in a Human
            Neurodevelopmental Disorder
  JOURNAL   Mol. Cell 59 (6), 956-969 (2015)
   PUBMED   26365382
  REMARK    GeneRIF: The USP7 deubiquitinating enzyme is an integral component
            of the MAGE-L2-TRIM27 ligase and is essential for WASH-mediated
            endosomal actin assembly and protein recycling.
REFERENCE   7  (residues 1 to 1086)
  AUTHORS   Robinson PA, Lomonte P, Leek, Markham AF and Everett RD.
  TITLE     Assignment1 of herpesvirus-associated ubiquitin-specific protease
            gene HAUSP to human chromosome band 16p13.3 by in situ
            hybridization
  JOURNAL   Cytogenet. Cell Genet. 83 (1-2), 100 (1998)
   PUBMED   9925944
REFERENCE   8  (residues 1 to 1086)
  AUTHORS   D'Andrea A and Pellman D.
  TITLE     Deubiquitinating enzymes: a new class of biological regulators
  JOURNAL   Crit. Rev. Biochem. Mol. Biol. 33 (5), 337-352 (1998)
   PUBMED   9827704
  REMARK    Review article
REFERENCE   9  (residues 1 to 1086)
  AUTHORS   Everett RD, Meredith M, Orr A, Cross A, Kathoria M and Parkinson J.
  TITLE     A novel ubiquitin-specific protease is dynamically associated with
            the PML nuclear domain and binds to a herpesvirus regulatory
            protein
  JOURNAL   EMBO J. 16 (7), 1519-1530 (1997)
   PUBMED   9130697
REFERENCE   10 (residues 1 to 1086)
  AUTHORS   Everett RD, Meredith M, Orr A, Cross A, Kathoria M and Parkinson J.
  TITLE     A novel ubiquitin-specific protease is dynamically associated with
            the PML nuclear domain and binds to a herpesvirus regulatory
            protein
  JOURNAL   EMBO J. 16 (3), 566-577 (1997)
   PUBMED   9034339
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from AK316441.1 and AC022167.7.
            On Nov 6, 2013 this sequence version replaced XP_005255622.1.
            
            Summary: The protein encoded by this gene belongs to the peptidase
            C19 family, which includes ubiquitinyl hydrolases. This protein
            deubiquitinates target proteins such as p53 (a tumor suppressor
            protein) and WASH (essential for endosomal protein recycling), and
            regulates their activities by counteracting the opposing ubiquitin
            ligase activity of proteins such as HDM2 and TRIM27, involved in
            the respective process. Mutations in this gene have been implicated
            in a neurodevelopmental disorder. [provided by RefSeq, Mar 2016].
            
            Transcript Variant: This variant (2) differs in the 5' UTR and
            coding sequence compared to variant 1. The resulting isoform (2)
            has a shorter and distinct N-terminus compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK316441.1, AY376241.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA1965299, SAMEA1966682
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Homo sapiens"
                     /db_xref="taxon:9606"
                     /chromosome="16"
                     /map="16p13.2"
     Protein         1..1086
                     /product="ubiquitin carboxyl-terminal hydrolase 7 isoform
                     2"
                     /EC_number="3.4.19.12"
                     /note="Herpes virus-associated ubiquitin-specific
                     protease; ubiquitin specific protease 7 (herpes
                     virus-associated); ubiquitin carboxyl-terminal hydrolase
                     7; ubiquitin thioesterase 7; deubiquitinating enzyme 7;
                     ubiquitin-specific-processing protease 7; ubiquitin
                     specific peptidase 7 (herpes virus-associated)"
                     /calculated_mol_wt=126066
     Region          39..1084
                     /region_name="COG5077"
                     /note="Ubiquitin carboxyl-terminal hydrolase
                     [Posttranslational modification, protein turnover,
                     chaperones]"
                     /db_xref="CDD:227409"
     Region          51..186
                     /region_name="MATH_HAUSP"
                     /note="Herpesvirus-associated ubiquitin-specific protease
                     (HAUSP, also known as USP7) family, N-terminal MATH
                     (TRAF-like) domain; composed of proteins similar to human
                     HAUSP, an enzyme that specifically catalyzes the
                     deubiquitylation of p53 and MDM2, hence...; cd03772"
                     /db_xref="CDD:239741"
     Site            order(88,102,136,148..153)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:239741"
     Region          196..507
                     /region_name="peptidase_C19C"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02659"
                     /db_xref="CDD:239124"
     Site            order(202,207,448,466)
                     /site_type="active"
                     /db_xref="CDD:239124"
     Region          604..849
                     /region_name="USP7_ICP0_bdg"
                     /note="ICP0-binding domain of Ubiquitin-specific protease
                     7; pfam12436"
                     /db_xref="CDD:289221"
     Region          859..1070
                     /region_name="USP7_C2"
                     /note="Ubiquitin-specific protease C-terminal; pfam14533"
                     /db_xref="CDD:291217"
     CDS             1..1086
                     /gene="USP7"
                     /gene_synonym="HAUSP; TEF1"
                     /coded_by="NM_001286457.1:117..3377"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /db_xref="CCDS:CCDS66941.1"
                     /db_xref="GeneID:7874"
                     /db_xref="HGNC:HGNC:12630"
                     /db_xref="MIM:602519"
ORIGIN      
        1 magnhrlgle agdtddppri tqnpvingnv alsdghntae edmeddtswr seatfqftve
       61 rfsrlsesvl sppcfvrnlp wkimvmprfy pdrphqksvg fflqcnaesd stswschaqa
      121 vlkiinyrdd eksfsrrish lffhkendwg fsnfmawsev tdpekgfidd dkvtfevfvq
      181 adaphgvawd skkhtgyvgl knqgatcymn sllqtlfftn qlrkavymmp tegddssksv
      241 plalqrvfye lqhsdkpvgt kkltksfgwe tldsfmqhdv qelcrvlldn venkmkgtcv
      301 egtipklfrg kmvsyiqcke vdyrsdrred yydiqlsikg kknifesfvd yvavgqldgd
      361 nkydagehgl qeaekgvkfl tlppvlhlql mrfmydpqtd qnikindrfe fpeqlpldef
      421 lqktdpkdpa nyilhavlvh sgdnhgghyv vylnpkgdgk wckfdddvvs rctkeeaieh
      481 nygghdddls vrhctnayml vyiresklse vlqavtdhdi pqqlverlqe ekrieaqkrk
      541 erqeahlymq vqivaedqfc ghqgndmyde ekvkytvfkv lknsslaefv qslsqtmgfp
      601 qdqirlwpmq arsngtkrpa mldneadgnk tmielsdnen pwtifletvd pelaasgatl
      661 pkfdkdhdvm lflkmydpkt rslnycghiy tpisckirdl lpvmcdragf iqdtslilye
      721 evkpnlteri qdydvsldka ldelmdgdii vfqkddpend nselptakey frdlyhrvdv
      781 ifcdktipnd pgfvvtlsnr mnyfqvaktv aqrlntdpml lqffksqgyr dgpgnplrhn
      841 yegtlrdllq ffkprqpkkl yyqqlkmkit dfenrrsfkc iwlnsqfree eitlypdkhg
      901 cvrdlleeck kavelgekas gklrlleivs ykiigvhqed elleclspat srtfrieeip
      961 ldqvdidken emlvtvahfh kevfgtfgip fllrihqgeh frevmkriqs lldiqekefe
     1021 kfkfaivmmg rhqyinedey evnlkdfepq pgnmshprpw lgldhfnkap krsrytylek
     1081 aikihn
//
Musitiin ilman suomennosta 5.6. 2018 
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