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måndag 27 april 2020

ZBTB1 ( 14q23.3) , ZNF909, C2H2- ryhmän Znf

ZBTB1 (ZNF909) https://www.ncbi.nlm.nih.gov/gene/22890

ZBTB1 (ZNF909) , Ryhmän C2H2 Znf proteiineja , 14q23.3) , ilmenee luuytimessä, lymfasolmukkeessa ja 25 muussa kudoksessa

 https://www.ncbi.nlm.nih.gov/protein/NP_001116801.1
ORIGIN      
        1 makpshssyv lqqlnnqrew gflcdcciai ddiyfqahka vlaacssyfr mffmnhqhst
       61 aqlnlsnmki saecfdlilq fmylgkimta pssfeqfkva mnylqlynvp dclediqdad
      121 cssskcsssa sskqnskmif gvrmyedtva rngneanrwc aepsstvntp hnreadeesl
      181 qlgnfpeplf dvckkssvsk lstpkervsr rfgrsftcds cgfgfscekl ldehvltctn
      241 rhlyqntrsy hrivdirdgk dsnikaefge kdssktfsaq tdkyrgdtsq aaddsasttg
      301 srksstvese iaseeksraa erkriiikme pediptdelk dfniikvtdk dcnestdnde
      361 ledepeepfy ryyveedvsi kksgrktlkp rmsvsaderg glenmrppnn sspvqedaen
      421 ascelcglti teedlsshyl akhienicac gkcgqilvkg rqlqehaqrc gepqdltmng
      481 lgnteekmdl eenpdeqsei rdmfvemldd frdnhyqins iqkkqlfkhs acpfrcpncg
      541 qrfetenlvv ehmsscldqd mfksaimeen erdhrrkhfc nlcgkgfyqr chlrehytvh
      601 tkekqfvcqt cgkqflrerq lrlhndmhkg maryvcsicd qgnfrkhdhv rhmishlsag
      661 eticqvcfqi fpnneqleqh mdvhlytcgi cgakfnlrkd mrshynakhl krt
//

Related articles in PubMed
What's a GeneRIF?
2009 Nov;23(11):1776-86. doi: 10.1210/me.2008-0280. Epub 2009 Sep 17.

Functional screening of FxxLF-like peptide motifs identifies SMARCD1/BAF60a as an androgen receptor cofactor that modulates TMPRSS2 expression.van de Wijngaart DJ1, Dubbink HJ, Molier M, de Vos C, Trapman J, Jenster G. Abstract

Androgen receptor (AR) transcriptional activity is tightly regulated by interacting cofactors and cofactor complexes. The best described cofactor interaction site in the AR is the hormone-induced coactivator binding groove in the ligand-binding domain, which serves as a high-affinity docking site for FxxLF-like motifs. This study aimed at identifying novel AR cofactors by in silico selection and functional screening of FxxLF-like peptide motifs.
 Candidate interacting motifs were selected from a proteome-wide screening and from a supervised screening focusing on components of protein complexes involved in transcriptional regulation. Of the 104 peptides tested, 12 displayed moderate to strong in vivo hormone-dependent interactions with AR. For three of these, ZBTB16/PLZF, SMARCA4/BRG1, and SMARCD1/BAF60a, the full-length protein was tested for interaction with AR. Of these, BAF60a, a subunit of the SWI/SNF chromatin remodeling complex, displayed hormone-dependent interactions with AR through its FxxFF motif. Vice versa, recruitment of BAF60a by the AR required an intact coactivator groove. BAF60a depletion by small interfering RNA in LNCaP cells demonstrated differential effects on expression of endogenous AR target genes. AR-driven expression of TMPRSS2 was almost completely blocked by BAF60a small interfering RNA. In summary, our data demonstrate that BAF60a directly interacts with the coactivator groove in the AR ligand-binding domain via its FxxFF motif, thereby selectively activating specific AR-driven promoters.

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